IL_8SCB_189

3D structure

PDB id

8SCB (explore in PDB, NAKB, or RNA 3D Hub)

Description

Terminating ribosome with SRI-41315

Experimental method

ELECTRON MICROSCOPY

Resolution

2.5 Å

Loop

Sequence

UACGCA*UGAAA

Length

11 nucleotides

Bulged bases

8SCB|1|9|C|65, 8SCB|1|9|C|67

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8SCB_189 not in the Motif Atlas

Homologous match to IL_4V88_390

Geometric discrepancy: 0.2261

The information below is about IL_4V88_390

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_87517.1

Basepair signature

cWW-L-R-L-R-tHS-L-cWW

Number of instances in this motif group

2

Unit IDs

8SCB|1|9|U|63
8SCB|1|9|A|64
8SCB|1|9|C|65
8SCB|1|9|G|66
8SCB|1|9|C|67
8SCB|1|9|A|68
*
8SCB|1|9|U|81
8SCB|1|9|G|82
8SCB|1|9|A|83
8SCB|1|9|A|84
8SCB|1|9|A|85

Current chains

Chain 9

18S_rRNA

Nearby chains

Chain GG

eS6

Chain YY

40S ribosomal protein S24