IL_8SCB_190

3D structure

PDB id

8SCB (explore in PDB, NAKB, or RNA 3D Hub)

Description

Terminating ribosome with SRI-41315

Experimental method

ELECTRON MICROSCOPY

Resolution

2.5 Å

Loop

Sequence

G(PSU)U*GUC

Length

6 nucleotides

Bulged bases

None detected

QA status

Modified nucleotides: PSU

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8SCB_190 not in the Motif Atlas

Geometric match to IL_2O3X_001

Geometric discrepancy: 0.2034

The information below is about IL_2O3X_001

Detailed Annotation

Stack and bulge

Broad Annotation

Stack and bulge

Motif group

IL_53541.1

Basepair signature

cWW-L-cWW

Number of instances in this motif group

12

Unit IDs

8SCB|1|9|G|108
8SCB|1|9|PSU|109
8SCB|1|9|U|110
*
8SCB|1|9|G|351
8SCB|1|9|U|352
8SCB|1|9|C|353

Current chains

Chain 9

18S_rRNA

Nearby chains

Chain EE

eS4 (S4 X isoform)

Chain II

eS8

Chain LL

uS17