IL_8SCB_216

3D structure

PDB id

8SCB (explore in PDB, NAKB, or RNA 3D Hub)

Description

Terminating ribosome with SRI-41315

Experimental method

ELECTRON MICROSCOPY

Resolution

2.5 Å

Loop

Sequence

GCU*A(A2M)C

Length

6 nucleotides

Bulged bases

None detected

QA status

Modified nucleotides: A2M

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8SCB_216 not in the Motif Atlas

Homologous match to IL_8C3A_427

Geometric discrepancy: 0.0724

The information below is about IL_8C3A_427

Detailed Annotation

Isolated non-canonical cWW pair

Broad Annotation

No text annotation

Motif group

IL_10289.2

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

237

Unit IDs

8SCB|1|9|G|673
8SCB|1|9|C|674
8SCB|1|9|U|675
*
8SCB|1|9|A|1030
8SCB|1|9|A2M|1031
8SCB|1|9|C|1032

Current chains

Chain 9

18S_rRNA

Nearby chains

Chain 5

Large subunit ribosomal RNA; LSU rRNA

Chain NN

uS15