IL_8SCB_225

3D structure

PDB id

8SCB (explore in PDB, NAKB, or RNA 3D Hub)

Description

Terminating ribosome with SRI-41315

Experimental method

ELECTRON MICROSCOPY

Resolution

2.5 Å

Loop

Sequence

CGG*CUG

Length

6 nucleotides

Bulged bases

None detected

QA status

Self-complementary:

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8SCB_225 not in the Motif Atlas

Homologous match to IL_4V88_427

Geometric discrepancy: 0.4671

The information below is about IL_4V88_427

Detailed Annotation

Isolated cWH basepair

Broad Annotation

No text annotation

Motif group

IL_70707.3

Basepair signature

cWW-cHW-cWW

Number of instances in this motif group

70

Unit IDs

8SCB|1|9|C|879
8SCB|1|9|G|880
8SCB|1|9|G|881
*
8SCB|1|9|C|905
8SCB|1|9|U|906
8SCB|1|9|G|907

Current chains

Chain 9

18S_rRNA

Nearby chains

Chain LL

uS17

Chain R

Ribosomal protein L19