IL_8SCB_228

3D structure

PDB id

8SCB (explore in PDB, NAKB, or RNA 3D Hub)

Description

Terminating ribosome with SRI-41315

Experimental method

ELECTRON MICROSCOPY

Resolution

2.5 Å

Loop

Sequence

GAC*GUUU

Length

7 nucleotides

Bulged bases

8SCB|1|9|U|1016

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8SCB_228 not in the Motif Atlas

Geometric match to IL_6OL3_002

Geometric discrepancy: 0.2518

The information below is about IL_6OL3_002

Detailed Annotation

Isolated non-canonical cWW pair

Broad Annotation

No text annotation

Motif group

IL_01003.2

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

213

Unit IDs

8SCB|1|9|G|925
8SCB|1|9|A|926
8SCB|1|9|C|927
*
8SCB|1|9|G|1014
8SCB|1|9|U|1015
8SCB|1|9|U|1016
8SCB|1|9|U|1017

Current chains

Chain 9

18S_rRNA

Nearby chains

Chain NN

uS15

Chain bb

eS27