IL_8SCB_236

3D structure

PDB id

8SCB (explore in PDB, NAKB, or RNA 3D Hub)

Description

Terminating ribosome with SRI-41315

Experimental method

ELECTRON MICROSCOPY

Resolution

2.5 Å

Loop

Sequence

CGAU*GCAG

Length

8 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8SCB_236 not in the Motif Atlas

Homologous match to IL_8C3A_444

Geometric discrepancy: 0.0755

The information below is about IL_8C3A_444

Detailed Annotation

Tandem non-canonical cWW pairs

Broad Annotation

No text annotation

Motif group

IL_54697.2

Basepair signature

cWW-cWW-cWW-cWW

Number of instances in this motif group

51

Unit IDs

8SCB|1|9|C|1098
8SCB|1|9|G|1099
8SCB|1|9|A|1100
8SCB|1|9|U|1101
*
8SCB|1|9|G|1131
8SCB|1|9|C|1132
8SCB|1|9|A|1133
8SCB|1|9|G|1134

Current chains

Chain 9

18S_rRNA

Nearby chains

Chain AA

uS2 (SA)

Chain BB

eS1

Chain NN

uS15

Chain aa

40S ribosomal protein S26