IL_8SCB_239
3D structure
- PDB id
- 8SCB (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Terminating ribosome with SRI-41315
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.5 Å
Loop
- Sequence
- GGAGUA(PSU)G*UGAAAC
- Length
- 14 nucleotides
- Bulged bases
- None detected
- QA status
- Modified nucleotides: PSU
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_8SCB_239 not in the Motif Atlas
- Homologous match to IL_4V88_440
- Geometric discrepancy: 0.167
- The information below is about IL_4V88_440
- Detailed Annotation
- 8x6 Sarcin-Ricin with inserted Y; G-bulge
- Broad Annotation
- Sarcin-Ricin; G-bulge
- Motif group
- IL_41756.1
- Basepair signature
- cWW-tSH-tHH-cSH-tWH-tHS-cWW-L
- Number of instances in this motif group
- 5
Unit IDs
8SCB|1|9|G|1168
8SCB|1|9|G|1169
8SCB|1|9|A|1170
8SCB|1|9|G|1171
8SCB|1|9|U|1172
8SCB|1|9|A|1173
8SCB|1|9|PSU|1174
8SCB|1|9|G|1175
*
8SCB|1|9|U|1186
8SCB|1|9|G|1187
8SCB|1|9|A|1188
8SCB|1|9|A|1189
8SCB|1|9|A|1190
8SCB|1|9|C|1191
Current chains
- Chain 9
- 18S_rRNA
Nearby chains
- Chain 5
- Large subunit ribosomal RNA; LSU rRNA
- Chain XX
- uS12
- Chain n
- eL41
Coloring options: