IL_8SCB_246

3D structure

PDB id

8SCB (explore in PDB, NAKB, or RNA 3D Hub)

Description

Terminating ribosome with SRI-41315

Experimental method

ELECTRON MICROSCOPY

Resolution

2.5 Å

Loop

Sequence

GG*CAC

Length

5 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8SCB_246 not in the Motif Atlas

Homologous match to IL_8C3A_451

Geometric discrepancy: 0.0868

The information below is about IL_8C3A_451

Detailed Annotation

Minor groove platform

Broad Annotation

No text annotation

Motif group

IL_92540.1

Basepair signature

cWW-cSH-cWW

Number of instances in this motif group

32

Unit IDs

8SCB|1|9|G|1235
8SCB|1|9|G|1236
*
8SCB|1|9|C|1521
8SCB|1|9|A|1522
8SCB|1|9|C|1523

Current chains

Chain 9

18S_rRNA

Nearby chains

Chain 2

Transfer RNA; tRNA

Chain PP

uS19

Chain SS

uS13

Chain ii

Eukaryotic peptide chain release factor subunit 1