IL_8SCB_249
3D structure
- PDB id
- 8SCB (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Terminating ribosome with SRI-41315
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.5 Å
Loop
- Sequence
- GACAGGAUUG*CUCGAUUCC
- Length
- 19 nucleotides
- Bulged bases
- 8SCB|1|9|G|1285
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_8SCB_249 not in the Motif Atlas
- Homologous match to IL_4V88_447
- Geometric discrepancy: 0.5764
- The information below is about IL_4V88_447
- Detailed Annotation
- Kink-turn
- Broad Annotation
- No text annotation
- Motif group
- IL_34780.1
- Basepair signature
- cWW-L-R-L-R-L-R-L-R-cWW-cWW-cWW
- Number of instances in this motif group
- 1
Unit IDs
8SCB|1|9|G|1281
8SCB|1|9|A|1282
8SCB|1|9|C|1283
8SCB|1|9|A|1284
8SCB|1|9|G|1285
8SCB|1|9|G|1286
8SCB|1|9|A|1287
8SCB|1|9|U|1288
8SCB|1|9|U|1289
8SCB|1|9|G|1290
*
8SCB|1|9|C|1309
8SCB|1|9|U|1310
8SCB|1|9|C|1311
8SCB|1|9|G|1312
8SCB|1|9|A|1313
8SCB|1|9|U|1314
8SCB|1|9|U|1315
8SCB|1|9|C|1316
8SCB|1|9|C|1317
Current chains
- Chain 9
- 18S_rRNA
Nearby chains
- Chain KK
- S10_plectin domain-containing protein
- Chain MM
- eS12
- Chain dd
- uS14
- Chain ff
- eS31
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