3D structure

PDB id
8SCB (explore in PDB, NAKB, or RNA 3D Hub)
Description
Terminating ribosome with SRI-41315
Experimental method
ELECTRON MICROSCOPY
Resolution
2.5 Å

Loop

Sequence
CAUGC*GAGG
Length
9 nucleotides
Bulged bases
8SCB|1|9|U|1397
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_8SCB_258 not in the Motif Atlas
Geometric match to IL_6JDV_002
Geometric discrepancy: 0.323
The information below is about IL_6JDV_002
Detailed Annotation
Tandem non-canonical cWW pairs
Broad Annotation
No text annotation
Motif group
IL_15225.1
Basepair signature
cWW-cWW-cWW-cWW
Number of instances in this motif group
33

Unit IDs

8SCB|1|9|C|1395
8SCB|1|9|A|1396
8SCB|1|9|U|1397
8SCB|1|9|G|1398
8SCB|1|9|C|1399
*
8SCB|1|9|G|1447
8SCB|1|9|A|1448
8SCB|1|9|G|1449
8SCB|1|9|G|1450

Current chains

Chain 9
18S_rRNA

Nearby chains

Chain FF
uS7
Chain QQ
uS9
Chain RR
eS17
Chain UU
uS10
Chain gg
Receptor for Activated C Kinase 1 (RACK1)

Coloring options:


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