IL_8SCB_260

3D structure

PDB id

8SCB (explore in PDB, NAKB, or RNA 3D Hub)

Description

Terminating ribosome with SRI-41315

Experimental method

ELECTRON MICROSCOPY

Resolution

2.5 Å

Loop

Sequence

ACUA*U(OMU)CU

Length

8 nucleotides

Bulged bases

8SCB|1|9|C|1403, 8SCB|1|9|U|1404

QA status

Modified nucleotides: OMU

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8SCB_260 not in the Motif Atlas

Geometric match to IL_4V88_456

Geometric discrepancy: 0.1996

The information below is about IL_4V88_456

Detailed Annotation

Minor groove platform

Broad Annotation

No text annotation

Motif group

IL_76458.1

Basepair signature

cWW-cSH-L-cWW

Number of instances in this motif group

2

Unit IDs

8SCB|1|9|A|1402
8SCB|1|9|C|1403
8SCB|1|9|U|1404
8SCB|1|9|A|1405
*
8SCB|1|9|U|1441
8SCB|1|9|OMU|1442
8SCB|1|9|C|1443
8SCB|1|9|U|1444

Current chains

Chain 9

18S_rRNA

Nearby chains

Chain DD

Ribosomal protein S3

Chain QQ

uS9

Chain UU

uS10