IL_8SCB_261

3D structure

PDB id

8SCB (explore in PDB, NAKB, or RNA 3D Hub)

Description

Terminating ribosome with SRI-41315

Experimental method

ELECTRON MICROSCOPY

Resolution

2.5 Å

Loop

Sequence

UACG*CCCCA

Length

9 nucleotides

Bulged bases

8SCB|1|9|C|1437

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8SCB_261 not in the Motif Atlas

Geometric match to IL_7LYF_004

Geometric discrepancy: 0.2825

The information below is about IL_7LYF_004

Detailed Annotation

Isolated non-canonical cWW pair

Broad Annotation

No text annotation

Motif group

IL_57744.1

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

22

Unit IDs

8SCB|1|9|U|1408
8SCB|1|9|A|1409
8SCB|1|9|C|1410
8SCB|1|9|G|1411
*
8SCB|1|9|C|1434
8SCB|1|9|C|1435
8SCB|1|9|C|1436
8SCB|1|9|C|1437
8SCB|1|9|A|1438

Current chains

Chain 9

18S_rRNA

Nearby chains

Chain QQ

uS9

Chain TT

eS19

Chain UU

uS10