IL_8SCB_264

3D structure

PDB id

8SCB (explore in PDB, NAKB, or RNA 3D Hub)

Description

Terminating ribosome with SRI-41315

Experimental method

ELECTRON MICROSCOPY

Resolution

2.5 Å

Loop

Sequence

ACU*AUU

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8SCB_264 not in the Motif Atlas

Geometric match to IL_4JGN_003

Geometric discrepancy: 0.1267

The information below is about IL_4JGN_003

Detailed Annotation

Isolated non-canonical cWW pair

Broad Annotation

Isolated non-canonical cWW pair

Motif group

IL_01003.1

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

174

Unit IDs

8SCB|1|9|A|1537
8SCB|1|9|C|1538
8SCB|1|9|U|1539
*
8SCB|1|9|A|1594
8SCB|1|9|U|1595
8SCB|1|9|U|1596

Current chains

Chain 9

18S_rRNA

Nearby chains

Chain FF

uS7

Chain QQ

uS9

Chain SS

uS13

Chain TT

eS19

Chain ZZ

eS25