IL_8SCB_270

3D structure

PDB id

8SCB (explore in PDB, NAKB, or RNA 3D Hub)

Description

Terminating ribosome with SRI-41315

Experimental method

ELECTRON MICROSCOPY

Resolution

2.5 Å

Loop

Sequence

GUC*GUC

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8SCB_270 not in the Motif Atlas

Homologous match to IL_8C3A_472

Geometric discrepancy: 0.0972

The information below is about IL_8C3A_472

Detailed Annotation

Isolated non-canonical cWW pair

Broad Annotation

No text annotation

Motif group

IL_10289.2

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

237

Unit IDs

8SCB|1|9|G|1706
8SCB|1|9|U|1707
8SCB|1|9|C|1708
*
8SCB|1|9|G|1826
8SCB|1|9|U|1827
8SCB|1|9|C|1828

Current chains

Chain 9

18S_rRNA

Nearby chains

Chain 5

Large subunit ribosomal RNA; LSU rRNA

Chain hh

mRNA

Chain ii

Eukaryotic peptide chain release factor subunit 1

Chain n

eL41