IL_8SCB_271
3D structure
- PDB id
- 8SCB (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Terminating ribosome with SRI-41315
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.5 Å
Loop
- Sequence
- CGCU*AAAAG
- Length
- 9 nucleotides
- Bulged bases
- 8SCB|1|9|A|1825
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_8SCB_271 not in the Motif Atlas
- Geometric match to IL_1DUQ_001
- Geometric discrepancy: 0.288
- The information below is about IL_1DUQ_001
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_25872.4
- Basepair signature
- cWW-cWW-cWH-cWW
- Number of instances in this motif group
- 5
Unit IDs
8SCB|1|9|C|1708
8SCB|1|9|G|1709
8SCB|1|9|C|1710
8SCB|1|9|U|1711
*
8SCB|1|9|A|1822
8SCB|1|9|A|1823
8SCB|1|9|A|1824
8SCB|1|9|A|1825
8SCB|1|9|G|1826
Current chains
- Chain 9
- 18S_rRNA
Nearby chains
- Chain 5
- Large subunit ribosomal RNA; LSU rRNA
- Chain XX
- uS12
- Chain hh
- mRNA
- Chain ii
- Eukaryotic peptide chain release factor subunit 1
- Chain n
- eL41
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