IL_8SCB_278

3D structure

PDB id

8SCB (explore in PDB, NAKB, or RNA 3D Hub)

Description

Terminating ribosome with SRI-41315

Experimental method

ELECTRON MICROSCOPY

Resolution

2.5 Å

Loop

Sequence

CGGAU*AGAAG

Length

10 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8SCB_278 not in the Motif Atlas

Homologous match to IL_8C3A_480

Geometric discrepancy: 0.1453

The information below is about IL_8C3A_480

Detailed Annotation

Triple sheared

Broad Annotation

No text annotation

Motif group

IL_50730.1

Basepair signature

cWW-tSH-tSH-tHS-cWW

Number of instances in this motif group

17

Unit IDs

8SCB|1|9|C|1742
8SCB|1|9|G|1743
8SCB|1|9|G|1744
8SCB|1|9|A|1745
8SCB|1|9|U|1746
*
8SCB|1|9|A|1788
8SCB|1|9|G|1789
8SCB|1|9|A|1790
8SCB|1|9|A|1791
8SCB|1|9|G|1792

Current chains

Chain 9

18S_rRNA

Nearby chains

Chain GG

eS6

Chain II

eS8

Chain W

60S ribosomal protein L24