IL_8SCB_285

3D structure

PDB id

8SCB (explore in PDB, NAKB, or RNA 3D Hub)

Description

Terminating ribosome with SRI-41315

Experimental method

ELECTRON MICROSCOPY

Resolution

2.5 Å

Loop

Sequence

CC(OMG)*CUG

Length

6 nucleotides

Bulged bases

None detected

QA status

Modified nucleotides: OMG

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8SCB_285 not in the Motif Atlas

Homologous match to IL_8P9A_255

Geometric discrepancy: 0.0827

The information below is about IL_8P9A_255

Detailed Annotation

Isolated non-canonical cWW pair

Broad Annotation

No text annotation

Motif group

IL_87907.2

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

179

Unit IDs

8SCB|1|5|C|1520
8SCB|1|5|C|1521
8SCB|1|5|OMG|1522
*
8SCB|1|5|C|1655
8SCB|1|5|U|1656
8SCB|1|5|G|1657

Current chains

Chain 5

28S_rRNA

Nearby chains

Chain C

60S ribosomal protein L4

Chain a

60S ribosomal protein L27a