IL_8SCB_286
3D structure
- PDB id
- 8SCB (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Terminating ribosome with SRI-41315
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.5 Å
Loop
- Sequence
- (OMG)A(A2M)AG*CUAGUAGC
- Length
- 13 nucleotides
- Bulged bases
- 8SCB|1|5|A|1650, 8SCB|1|5|G|1654
- QA status
- Modified nucleotides: OMG, A2M
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_8SCB_286 not in the Motif Atlas
- Homologous match to IL_8P9A_256
- Geometric discrepancy: 0.0541
- The information below is about IL_8P9A_256
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_54041.2
- Basepair signature
- cWW-L-R-L-R-tWH-L-cWW
- Number of instances in this motif group
- 7
Unit IDs
8SCB|1|5|OMG|1522
8SCB|1|5|A|1523
8SCB|1|5|A2M|1524
8SCB|1|5|A|1525
8SCB|1|5|G|1526
*
8SCB|1|5|C|1648
8SCB|1|5|U|1649
8SCB|1|5|A|1650
8SCB|1|5|G|1651
8SCB|1|5|U|1652
8SCB|1|5|A|1653
8SCB|1|5|G|1654
8SCB|1|5|C|1655
Current chains
- Chain 5
- 28S_rRNA
Nearby chains
- Chain C
- 60S ribosomal protein L4
- Chain L
- eL13
- Chain N
- Ribosomal protein L15
- Chain a
- 60S ribosomal protein L27a
- Chain j
- Ribosomal protein L37
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