IL_8SCB_313

3D structure

PDB id

8SCB (explore in PDB, NAKB, or RNA 3D Hub)

Description

Terminating ribosome with SRI-41315

Experimental method

ELECTRON MICROSCOPY

Resolution

2.5 Å

Loop

Sequence

GGAUAAC*GCUAA(OMU)A(OMC)

Length

15 nucleotides

Bulged bases

8SCB|1|9|OMU|172

QA status

Modified nucleotides: OMU, OMC

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8SCB_313 not in the Motif Atlas

Homologous match to IL_8C3A_402

Geometric discrepancy: 0.1167

The information below is about IL_8C3A_402

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_80604.4

Basepair signature

cWW-L-R-tWH-tWH-tHW-L-R-cWW

Number of instances in this motif group

4

Unit IDs

8SCB|1|9|G|145
8SCB|1|9|G|146
8SCB|1|9|A|147
8SCB|1|9|U|148
8SCB|1|9|A|149
8SCB|1|9|A|150
8SCB|1|9|C|151
*
8SCB|1|9|G|167
8SCB|1|9|C|168
8SCB|1|9|U|169
8SCB|1|9|A|170
8SCB|1|9|A|171
8SCB|1|9|OMU|172
8SCB|1|9|A|173
8SCB|1|9|OMC|174

Current chains

Chain 9

18S_rRNA

Nearby chains

Chain GG

eS6

Chain YY

40S ribosomal protein S24