IL_8SH5_001

3D structure

PDB id

8SH5 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of 3'cap-independent translation enhancers (CITE) from Pea enation mosaic virus RNA 2 (PEMV2) with Fab BL3-6K170A

Experimental method

X-RAY DIFFRACTION

Resolution

2.75 Å

Loop

Sequence

CACG*CAGG

Length

8 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8SH5_001 not in the Motif Atlas

Geometric match to IL_8C3A_109

Geometric discrepancy: 0.1577

The information below is about IL_8C3A_109

Detailed Annotation

Tandem non-canonical cWW pairs

Broad Annotation

No text annotation

Motif group

IL_67085.2

Basepair signature

cWW-cWW-cWW-cWW

Number of instances in this motif group

55

Unit IDs

8SH5|1|R|C|8||||2_556
8SH5|1|R|A|9||||2_556
8SH5|1|R|C|10||||2_556
8SH5|1|R|G|11||||2_556
*
8SH5|1|R|C|79||||2_556
8SH5|1|R|A|80||||2_556
8SH5|1|R|G|81||||2_556
8SH5|1|R|G|82||||2_556

Current chains

Chain R

RNA (88-MER)

Nearby chains

Chain H

Fab BL3-6K170A heavy chain