IL_8SUP_013

3D structure

PDB id

8SUP (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the 48S translation initiation complex assembled on the encephalomyocarditis virus IRES

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

CUGAC*GGAUG

Length

10 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8SUP_013 not in the Motif Atlas

Geometric match to IL_8GLP_204

Geometric discrepancy: 0.2518

The information below is about IL_8GLP_204

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_87767.4

Basepair signature

cWW-L-R-tSH-tHS-cWW

Number of instances in this motif group

19

Unit IDs

8SUP|1|2|C|188
8SUP|1|2|U|189
8SUP|1|2|G|190
8SUP|1|2|A|191
8SUP|1|2|C|192
*
8SUP|1|2|G|207
8SUP|1|2|G|208
8SUP|1|2|A|209
8SUP|1|2|U|210
8SUP|1|2|G|211

Current chains

Chain 2

18S rRNA

Nearby chains

Chain J

eS8