IL_8SUP_028
3D structure
- PDB id
- 8SUP (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of the 48S translation initiation complex assembled on the encephalomyocarditis virus IRES
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.1 Å
Loop
- Sequence
- UCCA*UUAA
- Length
- 8 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_8SUP_028 not in the Motif Atlas
- Geometric match to IL_8GLP_220
- Geometric discrepancy: 0.265
- The information below is about IL_8GLP_220
- Detailed Annotation
- Tandem non-canonical cWW pairs
- Broad Annotation
- No text annotation
- Motif group
- IL_71194.5
- Basepair signature
- cWW-cWW-cWW-cWW
- Number of instances in this motif group
- 43
Unit IDs
8SUP|1|2|U|566
8SUP|1|2|C|567
8SUP|1|2|C|568
8SUP|1|2|A|569
*
8SUP|1|2|U|581
8SUP|1|2|U|582
8SUP|1|2|A|583
8SUP|1|2|A|584
Current chains
- Chain 2
- 18S rRNA
Nearby chains
- Chain K
- uS4
- Chain Z
- eS24
Coloring options: