IL_8SUP_040

3D structure

PDB id

8SUP (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the 48S translation initiation complex assembled on the encephalomyocarditis virus IRES

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

GAAAAAAUU*ACCGCAGC

Length

17 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

8SUP|1|2|G|807
8SUP|1|2|A|808
8SUP|1|2|A|809
8SUP|1|2|A|810
8SUP|1|2|A|811
8SUP|1|2|A|812
8SUP|1|2|A|813
8SUP|1|2|U|814
8SUP|1|2|U|815
*
8SUP|1|2|A|849
8SUP|1|2|C|850
8SUP|1|2|C|851
8SUP|1|2|G|852
8SUP|1|2|C|853
8SUP|1|2|A|854
8SUP|1|2|G|855
8SUP|1|2|C|856

Current chains

Chain 2

18S rRNA

Nearby chains

Chain F

eS4 (S4 X isoform)

Chain K

uS4

Chain M

uS17

Chain X

uS8