IL_8SUP_052

3D structure

PDB id

8SUP (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the 48S translation initiation complex assembled on the encephalomyocarditis virus IRES

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

CGAUGC*GGGCAG

Length

12 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

8SUP|1|2|C|1098
8SUP|1|2|G|1099
8SUP|1|2|A|1100
8SUP|1|2|U|1101
8SUP|1|2|G|1102
8SUP|1|2|C|1103
*
8SUP|1|2|G|1129
8SUP|1|2|G|1130
8SUP|1|2|G|1131
8SUP|1|2|C|1132
8SUP|1|2|A|1133
8SUP|1|2|G|1134

Current chains

Chain 2

18S rRNA

Nearby chains

Chain B

uS2 (SA)

Chain C

eS1

Chain O

uS15

Chain S

eS17

Chain b

eS26

Chain c

eS27