IL_8SUP_058

3D structure

PDB id

8SUP (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the 48S translation initiation complex assembled on the encephalomyocarditis virus IRES

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

CCU*GCG

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8SUP_058 not in the Motif Atlas

Homologous match to IL_9H3G_213

Geometric discrepancy: 0.1226

The information below is about IL_9H3G_213

Detailed Annotation

Isolated non-canonical cWW pair

Broad Annotation

No text annotation

Motif group

IL_01003.7

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

240

Unit IDs

8SUP|1|2|C|1230
8SUP|1|2|C|1231
8SUP|1|2|U|1232
*
8SUP|1|2|G|1526
8SUP|1|2|C|1527
8SUP|1|2|G|1528

Current chains

Chain 2

18S rRNA

Nearby chains

Chain R

uS9

Chain T

uS13

Chain U

eS19

Chain i

Transfer RNA; tRNA