IL_8SYL_021

3D structure

PDB id

8SYL (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the Escherichia coli 70S ribosome in complex with amikacin, mRNA, and A-, P-, and E-site tRNAs

Experimental method

ELECTRON MICROSCOPY

Resolution

2.9 Å

Loop

Sequence

GGG*CAAUC

Length

8 nucleotides

Bulged bases

8SYL|1|A|G|776, 8SYL|1|A|A|788, 8SYL|1|A|A|789

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8SYL_021 not in the Motif Atlas

Homologous match to IL_5J7L_265

Geometric discrepancy: 0.0578

The information below is about IL_5J7L_265

Detailed Annotation

Multiple bulged bases

Broad Annotation

No text annotation

Motif group

IL_06549.2

Basepair signature

cWW-cWW

Number of instances in this motif group

6

Unit IDs

8SYL|1|A|G|775
8SYL|1|A|G|776
8SYL|1|A|G|777
*
8SYL|1|A|C|787
8SYL|1|A|A|788
8SYL|1|A|A|789
8SYL|1|A|U|790
8SYL|1|A|C|791

Current chains

Chain A

23S Ribosomal RNA

Nearby chains

Chain 6

50S ribosomal protein L34

Chain C

50S ribosomal protein L2

Chain U

50S ribosomal protein L22