IL_8SYL_041

3D structure

PDB id

8SYL (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the Escherichia coli 70S ribosome in complex with amikacin, mRNA, and A-, P-, and E-site tRNAs

Experimental method

ELECTRON MICROSCOPY

Resolution

2.9 Å

Loop

Sequence

GAAG*CGGC

Length

8 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8SYL_041 not in the Motif Atlas

Homologous match to IL_5J7L_283

Geometric discrepancy: 0.1496

The information below is about IL_5J7L_283

Detailed Annotation

Tandem non-canonical cWW pairs

Broad Annotation

No text annotation

Motif group

IL_85033.2

Basepair signature

cWW-cWW-cWW-cWW

Number of instances in this motif group

35

Unit IDs

8SYL|1|A|G|1038
8SYL|1|A|A|1039
8SYL|1|A|A|1040
8SYL|1|A|G|1041
*
8SYL|1|A|C|1114
8SYL|1|A|G|1115
8SYL|1|A|G|1116
8SYL|1|A|C|1117

Current chains

Chain A

23S Ribosomal RNA

Nearby chains

Chain 8

50S ribosomal protein L36

Chain O

50S ribosomal protein L16

Chain X

50S ribosomal protein L25