IL_8SYL_043

3D structure

PDB id

8SYL (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the Escherichia coli 70S ribosome in complex with amikacin, mRNA, and A-, P-, and E-site tRNAs

Experimental method

ELECTRON MICROSCOPY

Resolution

2.9 Å

Loop

Sequence

CGU*AGUG

Length

7 nucleotides

Bulged bases

8SYL|1|A|G|1248

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8SYL_043 not in the Motif Atlas

Homologous match to IL_4WF9_044

Geometric discrepancy: 0.1083

The information below is about IL_4WF9_044

Detailed Annotation

Isolated cWS basepair

Broad Annotation

No text annotation

Motif group

IL_42997.3

Basepair signature

cWW-L-R-cWW

Number of instances in this motif group

20

Unit IDs

8SYL|1|A|C|1196
8SYL|1|A|G|1197
8SYL|1|A|U|1198
*
8SYL|1|A|A|1247
8SYL|1|A|G|1248
8SYL|1|A|U|1249
8SYL|1|A|G|1250

Current chains

Chain A

23S Ribosomal RNA

Nearby chains

Chain E

50S ribosomal protein L4

Chain N

50S ribosomal protein L15

Chain S

50S ribosomal protein L20