IL_8SYL_048

3D structure

PDB id

8SYL (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the Escherichia coli 70S ribosome in complex with amikacin, mRNA, and A-, P-, and E-site tRNAs

Experimental method

ELECTRON MICROSCOPY

Resolution

2.9 Å

Loop

Sequence

CCAAC*GGG

Length

8 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8SYL_048 not in the Motif Atlas

Homologous match to IL_5J7L_291

Geometric discrepancy: 0.1423

The information below is about IL_5J7L_291

Detailed Annotation

C-loop

Broad Annotation

No text annotation

Motif group

IL_63596.11

Basepair signature

cWW-cWS-cSH-tWH-cWW-L

Number of instances in this motif group

19

Unit IDs

8SYL|1|A|C|1319
8SYL|1|A|C|1320
8SYL|1|A|A|1321
8SYL|1|A|A|1322
8SYL|1|A|C|1323
*
8SYL|1|A|G|1331
8SYL|1|A|G|1332
8SYL|1|A|G|1333

Current chains

Chain A

23S Ribosomal RNA

Nearby chains

Chain U

50S ribosomal protein L22