IL_8SYL_057

3D structure

PDB id

8SYL (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the Escherichia coli 70S ribosome in complex with amikacin, mRNA, and A-, P-, and E-site tRNAs

Experimental method

ELECTRON MICROSCOPY

Resolution

2.9 Å

Loop

Sequence

UGUAG*UGAGG

Length

10 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8SYL_057 not in the Motif Atlas

Homologous match to IL_5J7L_300

Geometric discrepancy: 0.1808

The information below is about IL_5J7L_300

Detailed Annotation

tSH-tHW-tHS

Broad Annotation

No text annotation

Motif group

IL_38862.4

Basepair signature

cWW-cSH-R-tWH-tHS-cWW

Number of instances in this motif group

5

Unit IDs

8SYL|1|A|U|1474
8SYL|1|A|G|1475
8SYL|1|A|U|1476
8SYL|1|A|A|1477
8SYL|1|A|G|1478
*
8SYL|1|A|U|1513
8SYL|1|A|G|1514
8SYL|1|A|A|1515
8SYL|1|A|G|1516
8SYL|1|A|G|1517

Current chains

Chain A

23S Ribosomal RNA

Nearby chains