IL_8SYL_086

3D structure

PDB id

8SYL (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the Escherichia coli 70S ribosome in complex with amikacin, mRNA, and A-, P-, and E-site tRNAs

Experimental method

ELECTRON MICROSCOPY

Resolution

2.9 Å

Loop

Sequence

UGAUG*CUUUA

Length

10 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8SYL_086 not in the Motif Atlas

Geometric match to IL_5TBW_121

Geometric discrepancy: 0.3734

The information below is about IL_5TBW_121

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_05145.3

Basepair signature

cWW-cWW-cWW-cWW-cWW

Number of instances in this motif group

13

Unit IDs

8SYL|1|A|U|2106
8SYL|1|A|G|2107
8SYL|1|A|A|2108
8SYL|1|A|U|2109
8SYL|1|A|G|2110
*
8SYL|1|A|C|2179
8SYL|1|A|U|2180
8SYL|1|A|U|2181
8SYL|1|A|U|2182
8SYL|1|A|A|2183

Current chains

Chain A

23S Ribosomal RNA

Nearby chains

Chain y

Transfer RNA; tRNA