IL_8SYL_089
3D structure
- PDB id
- 8SYL (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of the Escherichia coli 70S ribosome in complex with amikacin, mRNA, and A-, P-, and E-site tRNAs
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.9 Å
Loop
- Sequence
- GGAGG*CCGACCUUGAAAUAC
- Length
- 20 nucleotides
- Bulged bases
- 8SYL|1|A|A|2171, 8SYL|1|A|U|2172
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_8SYL_089 not in the Motif Atlas
- Homologous match to IL_5J7L_329
- Geometric discrepancy: 0.5116
- The information below is about IL_5J7L_329
- Detailed Annotation
- Kink-turn related
- Broad Annotation
- No text annotation
- Motif group
- IL_87290.1
- Basepair signature
- cWW-L-R-L-R-L-R-L-R-L-R-L-R-L-R-L
- Number of instances in this motif group
- 1
Unit IDs
8SYL|1|A|G|2124
8SYL|1|A|G|2125
8SYL|1|A|A|2126
8SYL|1|A|G|2127
8SYL|1|A|G|2128
*
8SYL|1|A|C|2160
8SYL|1|A|C|2161
8SYL|1|A|G|2162
8SYL|1|A|A|2163
8SYL|1|A|C|2164
8SYL|1|A|C|2165
8SYL|1|A|U|2166
8SYL|1|A|U|2167
8SYL|1|A|G|2168
8SYL|1|A|A|2169
8SYL|1|A|A|2170
8SYL|1|A|A|2171
8SYL|1|A|U|2172
8SYL|1|A|A|2173
8SYL|1|A|C|2174
Current chains
- Chain A
- 23S Ribosomal RNA
Nearby chains
- Chain y
- Transfer RNA; tRNA
Coloring options: