3D structure

PDB id
8SYL (explore in PDB, NAKB, or RNA 3D Hub)
Description
Cryo-EM structure of the Escherichia coli 70S ribosome in complex with amikacin, mRNA, and A-, P-, and E-site tRNAs
Experimental method
ELECTRON MICROSCOPY
Resolution
2.9 Å

Loop

Sequence
CUAGUAC*GGACCG
Length
13 nucleotides
Bulged bases
None detected
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_8SYL_108 not in the Motif Atlas
Geometric match to IL_5J7L_346
Geometric discrepancy: 0.0822
The information below is about IL_5J7L_346
Detailed Annotation
Sarcin-Ricin target in LSU H95; G-bulge
Broad Annotation
Sarcin-Ricin; G-bulge
Motif group
IL_16458.4
Basepair signature
cWW-L-R-L-R-cSH-tWH-tHS-cWW
Number of instances in this motif group
5

Unit IDs

8SYL|1|A|C|2652
8SYL|1|A|U|2653
8SYL|1|A|A|2654
8SYL|1|A|G|2655
8SYL|1|A|U|2656
8SYL|1|A|A|2657
8SYL|1|A|C|2658
*
8SYL|1|A|G|2663
8SYL|1|A|G|2664
8SYL|1|A|A|2665
8SYL|1|A|C|2666
8SYL|1|A|C|2667
8SYL|1|A|G|2668

Current chains

Chain A
23S Ribosomal RNA

Nearby chains

Chain G
50S ribosomal protein L6

Coloring options:


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