IL_8SYL_144

3D structure

PDB id

8SYL (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the Escherichia coli 70S ribosome in complex with amikacin, mRNA, and A-, P-, and E-site tRNAs

Experimental method

ELECTRON MICROSCOPY

Resolution

2.9 Å

Loop

Sequence

GAAGGG*CAUUGAC

Length

13 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8SYL_144 not in the Motif Atlas

Geometric match to IL_5J7L_023

Geometric discrepancy: 0.1125

The information below is about IL_5J7L_023

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_70801.1

Basepair signature

cWW-cWW-L-R-tWW-L-R-L-cWW

Number of instances in this motif group

1

Unit IDs

8SYL|1|a|G|450
8SYL|1|a|A|451
8SYL|1|a|A|452
8SYL|1|a|G|453
8SYL|1|a|G|454
8SYL|1|a|G|455
*
8SYL|1|a|C|477
8SYL|1|a|A|478
8SYL|1|a|U|479
8SYL|1|a|U|480
8SYL|1|a|G|481
8SYL|1|a|A|482
8SYL|1|a|C|483

Current chains

Chain a

16S Ribosomal RNA

Nearby chains

Chain p

30S ribosomal protein S16