IL_8SYL_155

3D structure

PDB id

8SYL (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the Escherichia coli 70S ribosome in complex with amikacin, mRNA, and A-, P-, and E-site tRNAs

Experimental method

ELECTRON MICROSCOPY

Resolution

2.9 Å

Loop

Sequence

AGAAUU*AGGAAU

Length

12 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8SYL_155 not in the Motif Atlas

Homologous match to IL_4LFB_030

Geometric discrepancy: 0.0852

The information below is about IL_4LFB_030

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_04668.2

Basepair signature

cWW-cWW-cWW-L-R-L-R-cWW

Number of instances in this motif group

8

Unit IDs

8SYL|1|a|A|673
8SYL|1|a|G|674
8SYL|1|a|A|675
8SYL|1|a|A|676
8SYL|1|a|U|677
8SYL|1|a|U|678
*
8SYL|1|a|A|712
8SYL|1|a|G|713
8SYL|1|a|G|714
8SYL|1|a|A|715
8SYL|1|a|A|716
8SYL|1|a|U|717

Current chains

Chain a

16S Ribosomal RNA

Nearby chains

Chain C

50S ribosomal protein L2

Chain f

30S ribosomal protein S6

Chain k

30S ribosomal protein S11

Chain r

30S ribosomal protein S18

Chain u

30S ribosomal protein S21