IL_8SYL_159
3D structure
- PDB id
- 8SYL (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of the Escherichia coli 70S ribosome in complex with amikacin, mRNA, and A-, P-, and E-site tRNAs
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.9 Å
Loop
- Sequence
- GGAGUACG*UAAAAC
- Length
- 14 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_8SYL_159 not in the Motif Atlas
- Homologous match to IL_5J7L_038
- Geometric discrepancy: 0.0866
- The information below is about IL_5J7L_038
- Detailed Annotation
- 8x6 Sarcin-Ricin with inserted Y; G-bulge
- Broad Annotation
- Sarcin-Ricin; G-bulge
- Motif group
- IL_41756.4
- Basepair signature
- cWW-tSH-tHH-cSH-tWH-tHS-cWW-L
- Number of instances in this motif group
- 4
Unit IDs
8SYL|1|a|G|887
8SYL|1|a|G|888
8SYL|1|a|A|889
8SYL|1|a|G|890
8SYL|1|a|U|891
8SYL|1|a|A|892
8SYL|1|a|C|893
8SYL|1|a|G|894
*
8SYL|1|a|U|905
8SYL|1|a|A|906
8SYL|1|a|A|907
8SYL|1|a|A|908
8SYL|1|a|A|909
8SYL|1|a|C|910
Current chains
- Chain a
- 16S Ribosomal RNA
Nearby chains
- Chain l
- 30S ribosomal protein S12
Coloring options: