IL_8SYL_179
3D structure
- PDB id
- 8SYL (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of the Escherichia coli 70S ribosome in complex with amikacin, mRNA, and A-, P-, and E-site tRNAs
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.9 Å
Loop
- Sequence
- CCG*CAAG
- Length
- 7 nucleotides
- Bulged bases
- 8SYL|1|a|C|1400, 8SYL|1|a|A|1503
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_8SYL_179 not in the Motif Atlas
- Geometric match to IL_5J7L_058
- Geometric discrepancy: 0.1125
- The information below is about IL_5J7L_058
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_61438.4
- Basepair signature
- cWW-L-cWW
- Number of instances in this motif group
- 4
Unit IDs
8SYL|1|a|C|1399
8SYL|1|a|C|1400
8SYL|1|a|G|1401
*
8SYL|1|a|C|1501
8SYL|1|a|A|1502
8SYL|1|a|A|1503
8SYL|1|a|G|1504
Current chains
- Chain a
- 16S Ribosomal RNA
Nearby chains
- Chain e
- 30S ribosomal protein S5
- Chain v
- M-F-Stop mRNA
- Chain x
- Transfer RNA; tRNA
Coloring options: