IL_8SYL_190

3D structure

PDB id

8SYL (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the Escherichia coli 70S ribosome in complex with amikacin, mRNA, and A-, P-, and E-site tRNAs

Experimental method

ELECTRON MICROSCOPY

Resolution

2.9 Å

Loop

Sequence

GGAACUAGG*CUGUC

Length

14 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8SYL_190 not in the Motif Atlas

Homologous match to IL_5J7L_386

Geometric discrepancy: 0.058

The information below is about IL_5J7L_386

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_22854.4

Basepair signature

cWW-tSH-cWW-tHW-R-L-cWW-L-L-R

Number of instances in this motif group

7

Unit IDs

8SYL|1|A|G|1666
8SYL|1|A|G|1667
8SYL|1|A|A|1668
8SYL|1|A|A|1669
8SYL|1|A|C|1670
8SYL|1|A|U|1671
8SYL|1|A|A|1672
8SYL|1|A|G|1673
8SYL|1|A|G|1674
*
8SYL|1|A|C|1990
8SYL|1|A|U|1991
8SYL|1|A|G|1992
8SYL|1|A|U|1993
8SYL|1|A|C|1994

Current chains

Chain A

23S Ribosomal RNA

Nearby chains

Chain D

50S ribosomal protein L3

Chain M

50S ribosomal protein L14