IL_8SYL_197

3D structure

PDB id

8SYL (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the Escherichia coli 70S ribosome in complex with amikacin, mRNA, and A-, P-, and E-site tRNAs

Experimental method

ELECTRON MICROSCOPY

Resolution

2.9 Å

Loop

Sequence

AG*(OMC)CU

Length

5 nucleotides

Bulged bases

None detected

QA status

Modified nucleotides: OMC

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8SYL_197 not in the Motif Atlas

Homologous match to IL_5J7L_391

Geometric discrepancy: 0.0984

The information below is about IL_5J7L_391

Detailed Annotation

Single stack bend

Broad Annotation

No text annotation

Motif group

IL_26793.1

Basepair signature

cWW-L-cWW

Number of instances in this motif group

16

Unit IDs

8SYL|1|A|A|2453
8SYL|1|A|G|2454
*
8SYL|1|A|OMC|2498
8SYL|1|A|C|2499
8SYL|1|A|U|2500

Current chains

Chain A

23S Ribosomal RNA

Nearby chains

Chain D

50S ribosomal protein L3

Chain Y

50S ribosomal protein L27

Chain w

Transfer RNA; tRNA