IL_8T2Y_061
3D structure
- PDB id
- 8T2Y (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Hypomethylated yeast 80S bound with cycloheximide, P-site tRNA, and A-site tRNA, messenger RNA, PRE
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.2 Å
Loop
- Sequence
- GUAGUAG*CGAAAC
- Length
- 13 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_8T2Y_061 not in the Motif Atlas
- Homologous match to IL_8P9A_289
- Geometric discrepancy: 0.1068
- The information below is about IL_8P9A_289
- Detailed Annotation
- 7x6 Sarcin-Ricin; G-bulge
- Broad Annotation
- Sarcin-Ricin; G-bulge
- Motif group
- IL_26307.2
- Basepair signature
- cWW-tSH-tHH-cSH-tWH-tHS-cWW
- Number of instances in this motif group
- 9
Unit IDs
8T2Y|1|A1|G|1444
8T2Y|1|A1|U|1445
8T2Y|1|A1|A|1446
8T2Y|1|A1|G|1447
8T2Y|1|A1|U|1448
8T2Y|1|A1|A|1449
8T2Y|1|A1|G|1450
*
8T2Y|1|A1|C|2354
8T2Y|1|A1|G|2355
8T2Y|1|A1|A|2356
8T2Y|1|A1|A|2357
8T2Y|1|A1|A|2358
8T2Y|1|A1|C|2359
Current chains
- Chain A1
- 25S rRNA
Nearby chains
- Chain A4
- 5.8S ribosomal RNA; 5.8S rRNA
- Chain AC
- RPL4A isoform 1
- Chain AP
- 60S ribosomal protein L17-A
Coloring options: