IL_8T2Y_076

3D structure

PDB id

8T2Y (explore in PDB, NAKB, or RNA 3D Hub)

Description

Hypomethylated yeast 80S bound with cycloheximide, P-site tRNA, and A-site tRNA, messenger RNA, PRE

Experimental method

ELECTRON MICROSCOPY

Resolution

2.2 Å

Loop

Sequence

AGUCGG*CUGU

Length

10 nucleotides

Bulged bases

8T2Y|1|A1|G|2335

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8T2Y_076 not in the Motif Atlas

Homologous match to IL_8C3A_083

Geometric discrepancy: 0.061

The information below is about IL_8C3A_083

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_06455.1

Basepair signature

cWW-L-R-L-cWW-L-L

Number of instances in this motif group

7

Unit IDs

8T2Y|1|A1|A|1901
8T2Y|1|A1|G|1902
8T2Y|1|A1|U|1903
8T2Y|1|A1|C|1904
8T2Y|1|A1|G|1905
8T2Y|1|A1|G|1906
*
8T2Y|1|A1|C|2333
8T2Y|1|A1|U|2334
8T2Y|1|A1|G|2335
8T2Y|1|A1|U|2336

Current chains

Chain A1

25S rRNA

Nearby chains

Chain AB

60S ribosomal protein L3

Chain AV

60S ribosomal protein L23-A