IL_8T2Y_085

3D structure

PDB id

8T2Y (explore in PDB, NAKB, or RNA 3D Hub)

Description

Hypomethylated yeast 80S bound with cycloheximide, P-site tRNA, and A-site tRNA, messenger RNA, PRE

Experimental method

ELECTRON MICROSCOPY

Resolution

2.2 Å

Loop

Sequence

UCAAAGU*AACCAAG

Length

14 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8T2Y_085 not in the Motif Atlas

Homologous match to IL_8C3A_093

Geometric discrepancy: 0.0834

The information below is about IL_8C3A_093

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_36973.8

Basepair signature

cWW-tSH-L-R-L-R-L-R-cWW-cWW

Number of instances in this motif group

3

Unit IDs

8T2Y|1|A1|U|2211
8T2Y|1|A1|C|2212
8T2Y|1|A1|A|2213
8T2Y|1|A1|A|2214
8T2Y|1|A1|A|2215
8T2Y|1|A1|G|2216
8T2Y|1|A1|U|2217
*
8T2Y|1|A1|A|2228
8T2Y|1|A1|A|2229
8T2Y|1|A1|C|2230
8T2Y|1|A1|C|2231
8T2Y|1|A1|A|2232
8T2Y|1|A1|A|2233
8T2Y|1|A1|G|2234

Current chains

Chain A1

25S rRNA

Nearby chains

Chain Ai

60S ribosomal protein L36-A

Chain Ao

60S ribosomal protein L42-A