IL_8T2Y_098
3D structure
- PDB id
- 8T2Y (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Hypomethylated yeast 80S bound with cycloheximide, P-site tRNA, and A-site tRNA, messenger RNA, PRE
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.2 Å
Loop
- Sequence
- GGC(PSU)*GA(PSU)UC
- Length
- 9 nucleotides
- Bulged bases
- None detected
- QA status
- Modified nucleotides: PSU
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_8T2Y_098 not in the Motif Atlas
- Homologous match to IL_8C3A_111
- Geometric discrepancy: 0.0751
- The information below is about IL_8C3A_111
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_50458.1
- Basepair signature
- cWW-cWW-L-R-L-cWW
- Number of instances in this motif group
- 5
Unit IDs
8T2Y|1|A1|G|2823
8T2Y|1|A1|G|2824
8T2Y|1|A1|C|2825
8T2Y|1|A1|PSU|2826
*
8T2Y|1|A1|G|2863
8T2Y|1|A1|A|2864
8T2Y|1|A1|PSU|2865
8T2Y|1|A1|U|2866
8T2Y|1|A1|C|2867
Current chains
- Chain A1
- 25S rRNA
Nearby chains
- Chain AI
- RPL10 isoform 1
- Chain Ab
- RPL29 isoform 1
- Chain tA
- Transfer RNA; tRNA
Coloring options: