IL_8T2Y_130

3D structure

PDB id

8T2Y (explore in PDB, NAKB, or RNA 3D Hub)

Description

Hypomethylated yeast 80S bound with cycloheximide, P-site tRNA, and A-site tRNA, messenger RNA, PRE

Experimental method

ELECTRON MICROSCOPY

Resolution

2.2 Å

Loop

Sequence

UGUAAG*CUGAG

Length

11 nucleotides

Bulged bases

8T2Y|1|A1|G|3369

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8T2Y_130 not in the Motif Atlas

Homologous match to IL_8P9A_360

Geometric discrepancy: 0.0477

The information below is about IL_8P9A_360

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_70411.2

Basepair signature

cWW-tSH-L-tHH-L-cWW

Number of instances in this motif group

7

Unit IDs

8T2Y|1|A1|U|3332
8T2Y|1|A1|G|3333
8T2Y|1|A1|U|3334
8T2Y|1|A1|A|3335
8T2Y|1|A1|A|3336
8T2Y|1|A1|G|3337
*
8T2Y|1|A1|C|3367
8T2Y|1|A1|U|3368
8T2Y|1|A1|G|3369
8T2Y|1|A1|A|3370
8T2Y|1|A1|G|3371

Current chains

Chain A1

25S rRNA

Nearby chains

Chain AB

60S ribosomal protein L3

Chain AW

RPL24A isoform 1