IL_8T2Y_132

3D structure

PDB id

8T2Y (explore in PDB, NAKB, or RNA 3D Hub)

Description

Hypomethylated yeast 80S bound with cycloheximide, P-site tRNA, and A-site tRNA, messenger RNA, PRE

Experimental method

ELECTRON MICROSCOPY

Resolution

2.2 Å

Loop

Sequence

AGAG*CGAU

Length

8 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8T2Y_132 not in the Motif Atlas

Homologous match to IL_8P9A_362

Geometric discrepancy: 0.0916

The information below is about IL_8P9A_362

Detailed Annotation

Double sheared; A in syn

Broad Annotation

Double sheared

Motif group

IL_09705.15

Basepair signature

cWW-tSH-tHS-cWW

Number of instances in this motif group

34

Unit IDs

8T2Y|1|A1|A|3342
8T2Y|1|A1|G|3343
8T2Y|1|A1|A|3344
8T2Y|1|A1|G|3345
*
8T2Y|1|A1|C|3360
8T2Y|1|A1|G|3361
8T2Y|1|A1|A|3362
8T2Y|1|A1|U|3363

Current chains

Chain A1

25S rRNA

Nearby chains

Chain AR

60S ribosomal protein L19-A

Chain AU

60S ribosomal protein L22-A

Chain BI

40S ribosomal protein S8-A