IL_8P9A_362

3D structure

PDB id

8P9A (explore in PDB, NAKB, or RNA 3D Hub)

Description

80S yeast ribosome in complex with Methyllissoclimide

Experimental method

X-RAY DIFFRACTION

Resolution

2.9 Å

Loop

Sequence

AGAG*CGAU

Length

8 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

Double sheared; A in syn

Broad Annotation

Double sheared

Motif group

IL_09705.15

Basepair signature

cWW-tSH-tHS-cWW

Number of instances in this motif group

34

Unit IDs

8P9A|1|AR|A|3342
8P9A|1|AR|G|3343
8P9A|1|AR|A|3344
8P9A|1|AR|G|3345
*
8P9A|1|AR|C|3360
8P9A|1|AR|G|3361
8P9A|1|AR|A|3362
8P9A|1|AR|U|3363

Current chains

Chain AR

25S ribosomal RNA

Nearby chains

Chain CT

60S ribosomal protein L19-A

Chain s8

40S ribosomal protein S8-A