IL_8T2Y_133

3D structure

PDB id

8T2Y (explore in PDB, NAKB, or RNA 3D Hub)

Description

Hypomethylated yeast 80S bound with cycloheximide, P-site tRNA, and A-site tRNA, messenger RNA, PRE

Experimental method

ELECTRON MICROSCOPY

Resolution

2.2 Å

Loop

Sequence

CC*GUUG

Length

6 nucleotides

Bulged bases

8T2Y|1|A1|U|3354, 8T2Y|1|A1|U|3355

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8T2Y_133 not in the Motif Atlas

Homologous match to IL_8P9A_363

Geometric discrepancy: 0.2828

The information below is about IL_8P9A_363

Detailed Annotation

Multiple bulged bases

Broad Annotation

No text annotation

Motif group

IL_84476.1

Basepair signature

cWW-cWW

Number of instances in this motif group

13

Unit IDs

8T2Y|1|A1|C|3349
8T2Y|1|A1|C|3350
*
8T2Y|1|A1|G|3353
8T2Y|1|A1|U|3354
8T2Y|1|A1|U|3355
8T2Y|1|A1|G|3356

Current chains

Chain A1

25S rRNA

Nearby chains

Chain BI

40S ribosomal protein S8-A