RNA 3D Hub //

Motif IL_84476.1 Version IL_84476.1 of this group appears in releases 3.95 to 3.98

#SLoop idPDBDisc#Non-coreAnnotationChain(s)Standardized name 1 2break 3 41-42-32-4
1 IL_4ERD_0014ERD0.60752C+DRNA (22-mer)C120C123*G146G147cWWcWWntsS
2 IL_7EU9_0017EU90.20302Multiple bulged basesBRNA (43-MER)C11C12*G16G19cWWcWW
3 IL_7D3J_0017D3J0.15432Multiple bulged basesBRNA (43-MER)C11C12*G16G19cWWcWW
4 IL_8CRE_1428CRE0.11922Multiple bulged bases (H)1 LSU rRNAC3314C3315*G3318G3321cWWcWW
5 IL_8P9A_3638P9A0.00002Multiple bulged basesAR LSU rRNAC3349C3350*G3353G3356cWWcWW
6 IL_8ZAU_0018ZAU0.14322ARNA (69-MER)C11G12*C38G41cWWcWW
7 IL_7Q80_0017Q800.19932Multiple bulged basesB+CRNA 2 + RNA 3C13G14*C35G38cWWcWW
8 IL_7Q80_0037Q800.24652Multiple bulged basesF+ERNA 3C35G38*C13G14cWWcWW
9 IL_1R3E_0021R3E0.27273Multiple bulged basesE+DRNA (17-mer)G408G412*C415C416cWWcWW
10 IL_1R3E_0011R3E0.34763Multiple bulged basesD+ERNA (17-mer)G408G412*C415C416cWWcWW
11 IL_6JXM_0016JXM0.40732Multiple bulged basesB tRNAA34C35*G53U56cWWcWW
12 IL_3R2D_0013R2D0.36262Multiple bulged basesR+SRNA (12-mer)G2C5*G10C11cWWcWW
13 IL_6LTU_0016LTU0.44002Multiple bulged basesBRNA (56-mer)C11U12*A16G19cWWcWW

3D structures

Complete motif including flanking bases
SequenceCounts
CC*GUUG4
CG*CUAG2
GUUCG*CC2
CGAC*GG1
CUAG*CG1
AC*GAUU1
GCUC*GC1
CU*AUUG1
Non-Watson-Crick part of the motif
SequenceCounts
*UU5
*UA2
UUC*2
GA*1
UA*1
*AU1
CU*1

Release history

Release3.953.963.973.98
Date2025-03-262025-04-232025-05-212025-06-18
StatusNew id, 2 parentsExact matchExact matchExact match

Parent motifs

This motif has no parent motifs.

Children motifs

This motif has no children motifs.
Annotations
  • Multiple bulged bases (10)
  • (2)
  • Multiple bulged bases (H) (1)
    • Basepair signature
    cWW-cWW
    Heat map statistics
    Min 0.09 | Avg 0.35 | Max 0.76
    Help

    Coloring options:

    IL_4ERD_001:IL_4ERD_001 = 0IL_4ERD_001:IL_7EU9_001 = 0.6403IL_4ERD_001:IL_7D3J_001 = 0.6249IL_4ERD_001:IL_8CRE_142 = 0.6121IL_4ERD_001:IL_8P9A_363 = 0.6075IL_4ERD_001:IL_8ZAU_001 = 0.6341IL_4ERD_001:IL_7Q80_001 = 0.6516IL_4ERD_001:IL_7Q80_003 = 0.6815IL_4ERD_001:IL_1R3E_002 = 0.6822IL_4ERD_001:IL_1R3E_001 = 0.7063IL_4ERD_001:IL_6JXM_001 = 0.7132IL_4ERD_001:IL_3R2D_001 = 0.6905IL_4ERD_001:IL_6LTU_001 = 0.7645IL_7EU9_001:IL_4ERD_001 = 0.6403IL_7EU9_001:IL_7EU9_001 = 0IL_7EU9_001:IL_7D3J_001 = 0.0885IL_7EU9_001:IL_8CRE_142 = 0.1405IL_7EU9_001:IL_8P9A_363 = 0.203IL_7EU9_001:IL_8ZAU_001 = 0.3058IL_7EU9_001:IL_7Q80_001 = 0.3532IL_7EU9_001:IL_7Q80_003 = 0.4099IL_7EU9_001:IL_1R3E_002 = 0.4457IL_7EU9_001:IL_1R3E_001 = 0.5122IL_7EU9_001:IL_6JXM_001 = 0.5098IL_7EU9_001:IL_3R2D_001 = 0.4297IL_7EU9_001:IL_6LTU_001 = 0.4304IL_7D3J_001:IL_4ERD_001 = 0.6249IL_7D3J_001:IL_7EU9_001 = 0.0885IL_7D3J_001:IL_7D3J_001 = 0IL_7D3J_001:IL_8CRE_142 = 0.1033IL_7D3J_001:IL_8P9A_363 = 0.1543IL_7D3J_001:IL_8ZAU_001 = 0.2571IL_7D3J_001:IL_7Q80_001 = 0.3136IL_7D3J_001:IL_7Q80_003 = 0.3619IL_7D3J_001:IL_1R3E_002 = 0.4138IL_7D3J_001:IL_1R3E_001 = 0.4755IL_7D3J_001:IL_6JXM_001 = 0.5052IL_7D3J_001:IL_3R2D_001 = 0.444IL_7D3J_001:IL_6LTU_001 = 0.455IL_8CRE_142:IL_4ERD_001 = 0.6121IL_8CRE_142:IL_7EU9_001 = 0.1405IL_8CRE_142:IL_7D3J_001 = 0.1033IL_8CRE_142:IL_8CRE_142 = 0IL_8CRE_142:IL_8P9A_363 = 0.1192IL_8CRE_142:IL_8ZAU_001 = 0.2264IL_8CRE_142:IL_7Q80_001 = 0.2835IL_8CRE_142:IL_7Q80_003 = 0.3305IL_8CRE_142:IL_1R3E_002 = 0.3626IL_8CRE_142:IL_1R3E_001 = 0.4378IL_8CRE_142:IL_6JXM_001 = 0.4665IL_8CRE_142:IL_3R2D_001 = 0.3976IL_8CRE_142:IL_6LTU_001 = 0.4167IL_8P9A_363:IL_4ERD_001 = 0.6075IL_8P9A_363:IL_7EU9_001 = 0.203IL_8P9A_363:IL_7D3J_001 = 0.1543IL_8P9A_363:IL_8CRE_142 = 0.1192IL_8P9A_363:IL_8P9A_363 = 0IL_8P9A_363:IL_8ZAU_001 = 0.1432IL_8P9A_363:IL_7Q80_001 = 0.1993IL_8P9A_363:IL_7Q80_003 = 0.2465IL_8P9A_363:IL_1R3E_002 = 0.2727IL_8P9A_363:IL_1R3E_001 = 0.3476IL_8P9A_363:IL_6JXM_001 = 0.4073IL_8P9A_363:IL_3R2D_001 = 0.3626IL_8P9A_363:IL_6LTU_001 = 0.44IL_8ZAU_001:IL_4ERD_001 = 0.6341IL_8ZAU_001:IL_7EU9_001 = 0.3058IL_8ZAU_001:IL_7D3J_001 = 0.2571IL_8ZAU_001:IL_8CRE_142 = 0.2264IL_8ZAU_001:IL_8P9A_363 = 0.1432IL_8ZAU_001:IL_8ZAU_001 = 0IL_8ZAU_001:IL_7Q80_001 = 0.1029IL_8ZAU_001:IL_7Q80_003 = 0.1416IL_8ZAU_001:IL_1R3E_002 = 0.1994IL_8ZAU_001:IL_1R3E_001 = 0.2514IL_8ZAU_001:IL_6JXM_001 = 0.376IL_8ZAU_001:IL_3R2D_001 = 0.3927IL_8ZAU_001:IL_6LTU_001 = 0.4759IL_7Q80_001:IL_4ERD_001 = 0.6516IL_7Q80_001:IL_7EU9_001 = 0.3532IL_7Q80_001:IL_7D3J_001 = 0.3136IL_7Q80_001:IL_8CRE_142 = 0.2835IL_7Q80_001:IL_8P9A_363 = 0.1993IL_7Q80_001:IL_8ZAU_001 = 0.1029IL_7Q80_001:IL_7Q80_001 = 0IL_7Q80_001:IL_7Q80_003 = 0.1103IL_7Q80_001:IL_1R3E_002 = 0.1817IL_7Q80_001:IL_1R3E_001 = 0.243IL_7Q80_001:IL_6JXM_001 = 0.3409IL_7Q80_001:IL_3R2D_001 = 0.3852IL_7Q80_001:IL_6LTU_001 = 0.4813IL_7Q80_003:IL_4ERD_001 = 0.6815IL_7Q80_003:IL_7EU9_001 = 0.4099IL_7Q80_003:IL_7D3J_001 = 0.3619IL_7Q80_003:IL_8CRE_142 = 0.3305IL_7Q80_003:IL_8P9A_363 = 0.2465IL_7Q80_003:IL_8ZAU_001 = 0.1416IL_7Q80_003:IL_7Q80_001 = 0.1103IL_7Q80_003:IL_7Q80_003 = 0IL_7Q80_003:IL_1R3E_002 = 0.1832IL_7Q80_003:IL_1R3E_001 = 0.2247IL_7Q80_003:IL_6JXM_001 = 0.349IL_7Q80_003:IL_3R2D_001 = 0.4416IL_7Q80_003:IL_6LTU_001 = 0.5064IL_1R3E_002:IL_4ERD_001 = 0.6822IL_1R3E_002:IL_7EU9_001 = 0.4457IL_1R3E_002:IL_7D3J_001 = 0.4138IL_1R3E_002:IL_8CRE_142 = 0.3626IL_1R3E_002:IL_8P9A_363 = 0.2727IL_1R3E_002:IL_8ZAU_001 = 0.1994IL_1R3E_002:IL_7Q80_001 = 0.1817IL_1R3E_002:IL_7Q80_003 = 0.1832IL_1R3E_002:IL_1R3E_002 = 0IL_1R3E_002:IL_1R3E_001 = 0.144IL_1R3E_002:IL_6JXM_001 = 0.2704IL_1R3E_002:IL_3R2D_001 = 0.3238IL_1R3E_002:IL_6LTU_001 = 0.4772IL_1R3E_001:IL_4ERD_001 = 0.7063IL_1R3E_001:IL_7EU9_001 = 0.5122IL_1R3E_001:IL_7D3J_001 = 0.4755IL_1R3E_001:IL_8CRE_142 = 0.4378IL_1R3E_001:IL_8P9A_363 = 0.3476IL_1R3E_001:IL_8ZAU_001 = 0.2514IL_1R3E_001:IL_7Q80_001 = 0.243IL_1R3E_001:IL_7Q80_003 = 0.2247IL_1R3E_001:IL_1R3E_002 = 0.144IL_1R3E_001:IL_1R3E_001 = 0IL_1R3E_001:IL_6JXM_001 = 0.3103IL_1R3E_001:IL_3R2D_001 = 0.3894IL_1R3E_001:IL_6LTU_001 = 0.5287IL_6JXM_001:IL_4ERD_001 = 0.7132IL_6JXM_001:IL_7EU9_001 = 0.5098IL_6JXM_001:IL_7D3J_001 = 0.5052IL_6JXM_001:IL_8CRE_142 = 0.4665IL_6JXM_001:IL_8P9A_363 = 0.4073IL_6JXM_001:IL_8ZAU_001 = 0.376IL_6JXM_001:IL_7Q80_001 = 0.3409IL_6JXM_001:IL_7Q80_003 = 0.349IL_6JXM_001:IL_1R3E_002 = 0.2704IL_6JXM_001:IL_1R3E_001 = 0.3103IL_6JXM_001:IL_6JXM_001 = 0IL_6JXM_001:IL_3R2D_001 = 0.3176IL_6JXM_001:IL_6LTU_001 = 0.4005IL_3R2D_001:IL_4ERD_001 = 0.6905IL_3R2D_001:IL_7EU9_001 = 0.4297IL_3R2D_001:IL_7D3J_001 = 0.444IL_3R2D_001:IL_8CRE_142 = 0.3976IL_3R2D_001:IL_8P9A_363 = 0.3626IL_3R2D_001:IL_8ZAU_001 = 0.3927IL_3R2D_001:IL_7Q80_001 = 0.3852IL_3R2D_001:IL_7Q80_003 = 0.4416IL_3R2D_001:IL_1R3E_002 = 0.3238IL_3R2D_001:IL_1R3E_001 = 0.3894IL_3R2D_001:IL_6JXM_001 = 0.3176IL_3R2D_001:IL_3R2D_001 = 0IL_3R2D_001:IL_6LTU_001 = 0.4006IL_6LTU_001:IL_4ERD_001 = 0.7645IL_6LTU_001:IL_7EU9_001 = 0.4304IL_6LTU_001:IL_7D3J_001 = 0.455IL_6LTU_001:IL_8CRE_142 = 0.4167IL_6LTU_001:IL_8P9A_363 = 0.44IL_6LTU_001:IL_8ZAU_001 = 0.4759IL_6LTU_001:IL_7Q80_001 = 0.4813IL_6LTU_001:IL_7Q80_003 = 0.5064IL_6LTU_001:IL_1R3E_002 = 0.4772IL_6LTU_001:IL_1R3E_001 = 0.5287IL_6LTU_001:IL_6JXM_001 = 0.4005IL_6LTU_001:IL_3R2D_001 = 0.4006IL_6LTU_001:IL_6LTU_001 = 0IL_4ERD_001IL_7EU9_001IL_7D3J_001IL_8CRE_142IL_8P9A_363IL_8ZAU_001IL_7Q80_001IL_7Q80_003IL_1R3E_002IL_1R3E_001IL_6JXM_001IL_3R2D_001IL_6LTU_001Discrepancy0.000.200.400.60
    Copyright 2025 BGSU RNA group. Page generated in 1.1269 s