Motif IL_84476.1 Version IL_84476.1 of this group appears in releases 3.95 to 3.99
| #S | Loop id | PDB | Disc | #Non-core | Annotation | Chain(s) | Standardized name for chain | 1 | 2 | break | 3 | 4 | 1-4 | 2-3 | 2-4 | ||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 1 | IL_4ERD_001 | 4ERD | 0.6075 | 2 | C+D | RNA (22-mer) | C | 120 | C | 123 | * | G | 146 | G | 147 | cWW | cWW | ntsS | |
| 2 | IL_7EU9_001 | 7EU9 | 0.2030 | 2 | Multiple bulged bases | B | RNA (43-MER) | C | 11 | C | 12 | * | G | 16 | G | 19 | cWW | cWW | |
| 3 | IL_7D3J_001 | 7D3J | 0.1543 | 2 | Multiple bulged bases | B | RNA (43-MER) | C | 11 | C | 12 | * | G | 16 | G | 19 | cWW | cWW | |
| 4 | IL_8CRE_142 | 8CRE | 0.1192 | 2 | Multiple bulged bases (H) | 1 | LSU rRNA | C | 3314 | C | 3315 | * | G | 3318 | G | 3321 | cWW | cWW | |
| 5 | IL_8P9A_363 | 8P9A | 0.0000 | 2 | Multiple bulged bases | AR | LSU rRNA | C | 3349 | C | 3350 | * | G | 3353 | G | 3356 | cWW | cWW | |
| 6 | IL_8ZAU_001 | 8ZAU | 0.1432 | 2 | A | RNA (69-MER) | C | 11 | G | 12 | * | C | 38 | G | 41 | cWW | cWW | ||
| 7 | IL_7Q80_001 | 7Q80 | 0.1993 | 2 | Multiple bulged bases | B+C | RNA 2 + RNA 3 | C | 13 | G | 14 | * | C | 35 | G | 38 | cWW | cWW | |
| 8 | IL_7Q80_003 | 7Q80 | 0.2465 | 2 | Multiple bulged bases | F+E | RNA 3 | C | 35 | G | 38 | * | C | 13 | G | 14 | cWW | cWW | |
| 9 | IL_1R3E_002 | 1R3E | 0.2727 | 3 | Multiple bulged bases | E+D | RNA (17-mer) | G | 408 | G | 412 | * | C | 415 | C | 416 | cWW | cWW | |
| 10 | IL_1R3E_001 | 1R3E | 0.3476 | 3 | Multiple bulged bases | D+E | RNA (17-mer) | G | 408 | G | 412 | * | C | 415 | C | 416 | cWW | cWW | |
| 11 | IL_6JXM_001 | 6JXM | 0.4073 | 2 | Multiple bulged bases | B | tRNA | A | 34 | C | 35 | * | G | 53 | U | 56 | cWW | cWW | |
| 12 | IL_3R2D_001 | 3R2D | 0.3626 | 2 | Multiple bulged bases | R+S | RNA (12-mer) | G | 2 | C | 5 | * | G | 10 | C | 11 | cWW | cWW | |
| 13 | IL_6LTU_001 | 6LTU | 0.4400 | 2 | Multiple bulged bases | B | RNA (56-mer) | C | 11 | U | 12 | * | A | 16 | G | 19 | cWW | cWW |
3D structures
Complete motif including flanking bases
| Sequence | Counts |
|---|---|
| CC*GUUG | 4 |
| CG*CUAG | 2 |
| GUUCG*CC | 2 |
| CGAC*GG | 1 |
| CUAG*CG | 1 |
| AC*GAUU | 1 |
| GCUC*GC | 1 |
| CU*AUUG | 1 |
Non-Watson-Crick part of the motif
| Sequence | Counts |
|---|---|
| *UU | 5 |
| *UA | 2 |
| UUC* | 2 |
| GA* | 1 |
| UA* | 1 |
| *AU | 1 |
| CU* | 1 |
- Annotations
-
- Multiple bulged bases (10)
- (2)
- Multiple bulged bases (H) (1)
- Basepair signature
- cWW-cWW
- Heat map statistics
- Min 0.09 | Avg 0.35 | Max 0.76
Coloring options: