IL_8T2Y_138
3D structure
- PDB id
- 8T2Y (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Hypomethylated yeast 80S bound with cycloheximide, P-site tRNA, and A-site tRNA, messenger RNA, PRE
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.2 Å
Loop
- Sequence
- UUCCC*GAUCA
- Length
- 10 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_8T2Y_138 not in the Motif Atlas
- Homologous match to IL_8C3A_147
- Geometric discrepancy: 0.0631
- The information below is about IL_8C3A_147
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_58103.10
- Basepair signature
- cWW-cSH-cWS-L-tSW-R-R-cWW
- Number of instances in this motif group
- 9
Unit IDs
8T2Y|1|A3|U|32
8T2Y|1|A3|U|33
8T2Y|1|A3|C|34
8T2Y|1|A3|C|35
8T2Y|1|A3|C|36
*
8T2Y|1|A3|G|41
8T2Y|1|A3|A|42
8T2Y|1|A3|U|43
8T2Y|1|A3|C|44
8T2Y|1|A3|A|45
Current chains
- Chain A3
- 5s rRNA
Nearby chains
- Chain A1
- Large subunit ribosomal RNA; LSU rRNA
- Chain AD
- RPL5 isoform 1
- Chain AJ
- RPL11A isoform 1
Coloring options: