IL_8T2Y_190
3D structure
- PDB id
- 8T2Y (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Hypomethylated yeast 80S bound with cycloheximide, P-site tRNA, and A-site tRNA, messenger RNA, PRE
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.2 Å
Loop
- Sequence
- CGAAG*CGUAG
- Length
- 10 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_8T2Y_190 not in the Motif Atlas
- Geometric match to IL_8VTW_052
- Geometric discrepancy: 0.2074
- The information below is about IL_8VTW_052
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_22281.1
- Basepair signature
- cWW-L-R-tWW-tHS-cWW
- Number of instances in this motif group
- 2
Unit IDs
8T2Y|1|B5|C|990
8T2Y|1|B5|G|991
8T2Y|1|B5|A|992
8T2Y|1|B5|A|993
8T2Y|1|B5|G|994
*
8T2Y|1|B5|C|1010
8T2Y|1|B5|G|1011
8T2Y|1|B5|U|1012
8T2Y|1|B5|A|1013
8T2Y|1|B5|G|1014
Current chains
- Chain B5
- 18S rRNA
Nearby chains
- Chain A1
- Large subunit ribosomal RNA; LSU rRNA
- Chain AA
- 60S ribosomal protein L2-A
- Chain An
- 60S ribosomal protein L41-A
- Chain BO
- 40S ribosomal protein S14-A
- Chain Ba
- RPS26B isoform 1
Coloring options: